WikiBiomeThe human microbiome encyclopedia
About WikiBiome

An encyclopedia for the relationships ordinary indexes miss.

WikiBiome maps organisms, metals, host defenses, environmental pressures, and disease signatures as one traceable scientific system.

822
public articles
1,940
indexed sources
70
disease signatures
Karen Pendergrass, founder and scientific editor of WikiBiome
Founder and scientific editorKaren PendergrassORCID 0000-0002-2348-7259 ↗

Open scientific education, generated from evidence.

WikiBiome is the open human microbiome encyclopedia and a project of Microbiome Medicine. It exists to make cross-disciplinary microbiome research readable without separating organisms from the metals, enzymes, ecological conditions, and host responses that help explain their behavior.

Most reference resources answer which organisms have been reported. WikiBiome also asks why those organisms may be present, which biochemical dependencies connect them, and what evidence supports each connection. Every generated article preserves its source trail so readers can move from an accessible synthesis back to the underlying research.

Karen Pendergrass

Karen Pendergrass is a translational microbiome scientist working at the intersection of the gut microbiome, trace metals, and chronic disease. Her research focuses on microbiome–metallomic signatures, multi-omic data integration, microbial trace-metal utilization, mismetallation, and nutritional immunity.

Her work examines how those systems can inform diagnostic, therapeutic, and regulatory tools across chronic kidney disease, endometriosis, metabolic disorders, and neurodegenerative disease. WikiBiome is the public knowledge layer for making those relationships inspectable and reusable.

03 · Editorial principles

Built like a wiki. Governed like an evidence system.

Traceability

Claims keep their source trail.

Inline citations, reference records, revision histories, and source dependencies remain attached to the pages generated from them.

Canonical structure

One subject, one public record.

Legacy disease and disease-signature pages reconcile into one canonical article rather than dividing the same scientific subject across competing URLs.

Open participation

Readers can improve the record.

Suggestions enter a review queue with a rationale and supporting source. Public editing is deliberately moderated while the contribution and revision systems mature.

Suggest an improvement →
Editorial firewall

Support cannot purchase influence.

Financial support cannot purchase citations, inclusion, favorable treatment, or visibility. Evidence and editorial relevance determine what appears.

Read the support policy →
04 · Stewardship

How the project is organized

WikiBiome
The public evidence-linked encyclopedia and research-tool layer.
Microbiome Medicine
The research project responsible for WikiBiome’s scientific direction and development.
Microbiome Signatures LLC
The parent company of WikiBiome and Microbiome Medicine and the entity through which support payments are processed.

WikiBiome content is educational and does not provide medical diagnosis or treatment.